Differential expression with pseudobulking

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
35/100
Issue type
Documentation
Clarity
Mostly clear
Activity status
Stale
Tech stack
python
Domain
bioinformatics, documentation

Research direction

Start by reading the referenced scanpy pull request and review thread to understand the differential-expression pseudobulking workflow. Create a tutorial covering that workflow, then link it from scanpy. Done means both checklist items are completed; no tutorial file or test is named in the issue.

Written by the indexing model from the issue text.

Description

See this thread: https://github.com/scverse/scanpy/pull/3792?notification_referrer_id=NT_kwDOAARy97IxODgyNDM4ODA2MDoyOTE1NzU&notifications_query=reason%3Areview-requested#pullrequestreview-3207088267

TODO:

  • make tutorial
  • link it from scanpy

cc @Zethson @grst @ilan-gold

Dominant language
Python
Stars
22
Forks
18
Avg merge
3h 9m
Merged PRs (30d)
9

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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