sanger-tol/sequencecomposition

Transcript mappability

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#31 opened on May 2, 2022

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Description

Description of feature

This is ideally done with RNA-seq data. It is equal to percentage of reads mapped to the genome. Possible software: WGSIM

Contributor guide

Research direction
Review the Nextflow pipeline structure and existing process definitions. Investigate how to use WGSIM to simulate reads and calculate the percentage of reads mapped to the genome.
Tech stack
groovy
Domain
data
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
3
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
Half day
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Fresh
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflow
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
65