sanger-tol/sequencecomposition

DFAM

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#25 opened on Jun 17, 2024

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 (0 comments) (0 reactions) (0 assignees)Nextflow (3 forks)auto 404
good first issuehelp wanted

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Description

Copy the functionality from the GDA pipeline.

Essentially, this is running hmmscan across the entire genome.

Contributor guide

Research direction
Review the GDA pipeline to understand how hmmscan is implemented, then integrate the equivalent functionality into this Nextflow pipeline.
Tech stack
None
Domain
data engineering
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
3
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
Half day
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Fresh
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflow
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
50