sanger-tol/sequencecomposition

Tandem repeats from `trf`

Open

#17 opened on Jun 2, 2024

View on GitHubContributor guide
 (1 comment) (0 reactions) (0 assignees)Nextflow (3 forks)auto 404
good first issuehelp wanted

Repository metrics

Stars
 (2 stars)
PR merge metrics
 (PR metrics pending)

Description

Copy the functionality from the GDA pipeline. Software available at https://github.com/Benson-Genomics-Lab/TRF.

Contributor guide

Research direction
Inspect the GDA pipeline source to understand how TRF is used for tandem repeats, then locate the corresponding process structure in this repository to add a similar step. Verify whether TRF is already included in any container or needs to be added.
Tech stack
shell
Domain
dataanalytics
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
3
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-2 days
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Mostly clear
Prerequisites
GitNextflow
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
55