Add Noodle Biomedical Literature Discovery to the Research Software Encyclopedia
Nobody has claimed this yet.
Assessment
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Newbie friendliness
- 72/100
- Issue type
- Documentation
- Clarity
- Mostly clear
- Activity status
- Active
- Tech stack
- github
- Domain
- content, documentation
Research direction
Start by checking https://rseng.github.io/software/data.json and the repository's current rse CLI workflow for adding software records. Add one record for Noodle Biomedical Literature Discovery MCP, representing the repository, website, and hosted MCP service as facets rather than duplicates, and confirm the generated data contains the supplied metadata and DOI links.
Written by the indexing model from the issue text.
Description
Please add the following public research software repository to the Research Software Encyclopedia:
- Repository: https://github.com/helena-bioinformatics/noodle-mcp
- Name: Noodle Biomedical Literature Discovery MCP
- Website: https://noodle.helena.bio
- Description: Public, read-only biomedical literature discovery software for natural-language and PMID/DOI/PMCID search, source-linked publication inspection, bounded citation and semantic graph traversal, and corpus coverage inspection.
- Software DOI: https://doi.org/10.5281/zenodo.22166486
- Concept DOI: https://doi.org/10.5281/zenodo.22166485
- Licence: Apache-2.0
- Provider: Helena Bioinformatics
- Primary research-software source: the GitHub repository above
The repository is also the official public adapter for the canonical hosted Model Context Protocol service at https://api.helena.bio/noodle/v1/mcp. The product website and MCP interface should be represented as facets of the same software, not as duplicate records.
I verified that neither the canonical repository nor the task-first software title currently appears in https://rseng.github.io/software/data.json, and no matching open or closed issue was found.
If you prefer a pull request generated with the rse CLI instead of a maintainer-side addition, please indicate the current supported workflow and I will follow it.
- Dominant language
- Shell
- Stars
- 14
- Forks
- 4
- Avg merge
- 1h 6m
- Merged PRs (30d)
- 2
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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