r-bioinformatics/edgePy

Port limma and edgeR

Open

#1 opened on May 9, 2018

View on GitHub
 (2 comments) (0 reactions) (2 assignees)Python (11 forks)github user discovery
feature requesthelp wanted

Repository metrics

Stars
 (104 stars)
PR merge metrics
 (PR metrics pending)

Description

From early commit of README.md:

limma and edgeR need to be ported. The dependency graphs for those libraries should be used as well.

Source: https://github.com/r-bioinformatics/edgePy/tree/72ca7f243fcff33f23118c30529de3bbded67c01

Contributor guide

Research direction
Review the R packages limma and edgeR to understand their functionality and dependencies. Then design a Python implementation plan and start porting the core functions.
Tech stack
python
Domain
data
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
3
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
3-5 days
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Clear
Prerequisites
PythonGit
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
50