seanome/kmerseek
Get Uniprot domains from overlapping regions found in k-mers
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#6 opened on 2025/02/11
Pythonhelp wanted
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説明
Initial work started in this PR https://github.com/seanome/kmerseek/pull/1 in src/kmerseek/uniprot.py, but it's just a dummy function with pass. Would probably involve JSON and/or XML parsing to search through Uniprot data, but more likely XML because that's the easiest download from the regular Uniprot releases. Also see: https://github.com/olgabot/botryllus-mhc/blob/main/notebooks/400_query_uniprot_rest_api.ipynb