seanome/kmerseek
Figure out why "manysearch" and "multisearch" aren't working with rocksdbs
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#4 opened on 2025/02/11
Rustenhancementgood first issuehelp wanted
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説明
Right now, have to use zipped signatures for both manysearch and multisearch, but theoretically, RocksDB indices should work, according to the branchwater documentation. I don't know why this isn't working, but this will require some digging into the Branchwater Rust code, specifically multicollection::from_rocksdb here: https://github.com/sourmash-bio/sourmash_plugin_branchwater/blob/776727091d78af7de4990578ec6d07b12882c1b8/src/utils/multicollection.rs#L193
Will also need to create a custom conda environment with development versions of both sourmash_plugin_branchwater, kmerseek, so this one is a bit advanced.