Repository di tseemann

Summary of the torstyverse bioinformatics softwate suite

Ultimo commit 8 feb 2026

Ultimo commit 31 ott 2013

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

Ultimo commit 27 ago 2019

Interactive, web tool for exploring pan-genome of bacterial strains

Ultimo commit 21 mar 2017

Ultimo commit 7 ott 2019

MUMmer3

Ultimo commit 30 apr 2013

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes

Ultimo commit 16 feb 2020

Fast genome and metagenome distance estimation using MinHash

Ultimo commit 18 ott 2019

Pair-End AssembeR

Ultimo commit 16 apr 2014

An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.

Ultimo commit 4 mar 2015

A toolbox for pangenome analysis and threshold evaluation.

Ultimo commit 30 set 2019

Prodigal Gene Prediction Software

Ultimo commit 18 feb 2015

Rapid large-scale prokaryote pan genome analysis

Ultimo commit 1 nov 2019

Salmonella serotyping from genome sequencing data

Ultimo commit 3 set 2018

Ultimo commit 27 mag 2019

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Ultimo commit 5 mar 2020

The Other Alternative Sequence Type

Ultimo commit 27 feb 2026

Ultimo commit 10 ott 2018

hybrid assembly pipeline for bacterial genomes

Ultimo commit 21 ott 2019

:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.

Ultimo commit 21 dic 2017