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Dépôts de snakemake

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snakemake/snakedeployPython

deploy a snakemake pipeline directly from version control (under development)

Dernier commit 1 juin 2026

 (25 stars) (13 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakefaceCSS

The snakemake interface, currently works like a notebook (under development)

Dernier commit 30 déc. 2021

 (20 stars) (6 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemakeHTML

This is the development home of the workflow management system Snakemake. For general information, see

Dernier commit 10 nov. 2023

 (1 973 stars) (477 forks) (2 issues indexées) (2 good first issues ouvertes)
snakemake/snakemake-executor-plugin-fluxPython

Snakemake custom executor plugin for Flux Framework (under development)

Dernier commit 7 sept. 2024

 (1 star) (2 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-executor-plugin-googlebatchPython

Snakemake executor plugin for Google Batch

Dernier commit 1 janv. 2026

 (6 stars) (11 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-executor-plugin-kueuePython

A Snakemake executor plugin to enable running jobs with Kueue on Kubernetes

Dernier commit 21 mars 2024

 (6 stars) (2 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-plugin-docs-exampleRuby

An example documentation site for a plugin using snakemake-plugin-docs-jekyll

Dernier commit 15 août 2023

 (0 stars) (0 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-plugin-docs-jekyllCSS

Jekyll template for snakemake plugins (under development)!

Dernier commit 15 août 2023

 (0 stars) (0 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-spack-tutorialPython

The snakemake tutorial run with spack! (under development)

Dernier commit 17 août 2021

 (4 stars) (2 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-storage-plugin-gcsPython

A Snakemake storage plugin for Google Cloud Storage

Dernier commit 24 mars 2025

 (4 stars) (8 forks) (0 issues indexées) (0 good first issues ouvertes)
snakemake/snakemake-tutorials

start of repository with various snakemake tutorials (under development)

Dernier commit 25 mars 2020

 (5 stars) (2 forks) (0 issues indexées) (0 good first issues ouvertes)