FATAL Error: Failed to create checkpoint because of error...

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
35/100
Issue type
Bug
Clarity
Needs clarification
Activity status
Stale
Tech stack
java, sql
Domain
databases

Research direction

Reproduce the reported workload with Java 17, DuckDB 1.2.1, duplicate connections, CompletableFuture.runAsync, and batched prepared INSERTs. Start at DuckDBPreparedStatement.executeBatch and the native duckdb_jdbc_execute entry in the stack trace, then trace connection closing and checkpoint behavior. Done means identifying the cause of the WAL deletion failure and documenting a verified fix or workaround.

Written by the indexing model from the issue text.

Description

JAVA 17, DuckDB 1.2 (duckdb_jdbc-1.2.1.jar)

I am trying to perform some queued INSERTs (specifically preparedStatement, batch inserts) using CompletableFuture (i.e. background executor, but same process). All these go to the same table.

The background method uses (partially) :
try (var connection = duckDBConnection.duplicate(); var statement = connection.prepareStatement(INSERT_TEMPLATE))) { for (...) { statement.setString(); statement.set... statement.addBatch(); ... } statement.executeBatch(); }

I'm using CompletableFuture.runAsync, so these go on the Java commonPool() executor, queued to run asap.

After a few of these complete, I'm getting the exception:
java.sql.SQLException: FATAL Error: Failed to create checkpoint because of error: Failed to delete file "e:\vectorindex\efr.duckdb.wal": The process cannot access the file because it is being used by another process.

at org.duckdb.DuckDBNative.duckdb_jdbc_execute(Native Method)
at org.duckdb.DuckDBPreparedStatement.execute(DuckDBPreparedStatement.java:148)
at org.duckdb.DuckDBPreparedStatement.executeBatchedPreparedStatement(DuckDBPreparedStatement.java:489)
at org.duckdb.DuckDBPreparedStatement.executeBatch(DuckDBPreparedStatement.java:474)
...`

This is entirely unexpected since all of the code is running in the same process, and according to the docs, this should be fine. And they are all unique INSERTs (there isn't even a PK on the table), so there should be no row-based table contention.

It appears that DuckDB is performing checkpoints on its own...maybe when the duplicate session is closing in the method? And whether it is performing checkpoints or not, this appears to be a bug, because it's documented that multiple threads within the same process should be able to r/w the same database.

Does the WAL strategy need to be adjusted (internally)?

Are there any workarounds for now?

Thanks!

Dominant language
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Forks
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Avg merge
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Merged PRs (30d)
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