Cascade delete: a restriction referencing an earlier-deleted (downstream) table is silently invalidated by reverse-topological delete order — materialize (independent of MySQL 1093)
Nobody has claimed this yet.
Assessment
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Newbie friendliness
- 48/100
Research direction
Trace the reverse-topological delete loop in table.py:1089, seed restriction storage in diagram.py:365, and restriction propagation around diagram.py:1084 and _propagate_part_to_master. Review condition.py:438-456 and :474 to understand compiled restriction references, then add parity coverage for Part→Master, Part-of-Part, and downstream-seed cases. Done means delete mode materializes restrictions referencing earlier-deleted tables while preview and export modes do not.
Written by the indexing model from the issue text.
Description
Summary
A cascade delete whose restriction references a table that will be deleted earlier in the cascade
is silently invalidated by DataJoint's reverse-topological delete order — and this is independent
of MySQL error 1093. Table.delete deletes descendants (leaves) first and the seed last; if a
restriction references a table deleted before its own, that reference evaluates to empty by the
time its DELETE runs, so the row is stranded or mis-deleted. The fix is to materialize such
restrictions to literal keys before any deletion. MySQL 1093 is only an incidental, partial symptom
(see "Backend symptoms") — not the cause, and it must not shape the fix.
Root cause (backend-independent)
Table.delete executes one DELETE per table in reverse-topological order (table.py:1089), leaves
first, seed last. Restrictions are evaluated live at each table's delete time. Two kinds of
restriction reference a table deleted earlier:
- User seed restriction referencing a descendant.
(A & (X & cond)).delete()withXdownstream
ofA:X(descendant) is deleted first; thenA's DELETE re-evaluatesA & (X & cond), but the
matchingXrows are gone →Amatches nothing →Astranded while itsXchildren were
deleted. - Engine Part→Master upward reference. The Master's restriction is derived from its Part; the Part
(descendant) is deleted first → the Master would strand. Already materialized today in
_propagate_part_to_master.
Both are the same bug — a restriction referencing a table deleted before its own — on both backends.
Backend symptoms (secondary — NOT the framing)
In the sub-case where forward propagation makes a table's restriction reference itself, the
generated DELETE contains a self-referential subquery. MySQL rejects it with error 1093 and aborts
(an incidental, loud, partial backstop); PostgreSQL permits it and fails silently. But 1093 only
covers the self-referential subset — the seed-stranding case (#1: A's DELETE references X, not A)
does not trigger 1093 on either backend and is silent wherever it isn't materialized. So 1093 is
neither necessary nor sufficient to describe the problem.
Recommended approach
Materialize any cascade restriction that references a table deleted before it (a descendant in
delete order), before executing deletes. One backend-independent, 1093-free rule; it unifies the seed
case (#1) and the Part→Master case (#2).
- Detection (practical): text-search each table's compiled restriction for the
fully-qualified, quoted name of any earlier-deleted table in the cascade set. DataJoint emits
canonical qualified names, so this is reliable for engine-generated SQL; the action is materialize,
not reject, so false positives cost only an unnecessaryfetch('KEY'), never a wrong result.
User-authored raw SQL with non-canonical names is the advanced user's responsibility.- Detecting only self-reference (a table's own name) is INSUFFICIENT — it catches the 1093
sub-case but MISSES the seed (whose restriction names a descendant, not itself). The detection
target is "references an earlier-deleted table," not "references itself." - Simplest conservative variant: always materialize the seed restriction in delete mode (plus the
existing Part→Master materialization). One extrafetchof the keys being deleted; uniformly
correct. Detection merely avoids that fetch for simple restrictions that reference nothing downstream.
- Detecting only self-reference (a table's own name) is INSUFFICIENT — it catches the 1093
- Unifying the Part→Master special-case (
extract_master/_propagate_part_to_master) under this single
rule is a larger v2.4 refactor; a targeted 2.3.x fix can add seed-restriction materialization
first (the currently-unhandled case).
Delete vs. non-delete mode (materialize flag)
- Delete mode: materialize per the rule above.
- Non-delete mode (preview
counts(), data export): materialize nothing. The ordering hazard
exists only when rows are deleted; a preview/export issues SELECTs, which evaluate against current
data (and self-referential SELECTs are legal on both backends — 1093 is DML-only). Removes today's
wasted preview-time materialization (review F3) — a speedup.
Preview/delete divergence risk
Materialize from the same restricted expression the preview counts (restricted_T.fetch('KEY') vs
len(restricted_T)) so the affected set is identical by construction. Residual divergence is only
(a) concurrent data change between preview and delete (inherent to any preview-then-act split), and
(b) implementation drift between the count and materialize paths → mitigate with a shared builder and
parity tests across the tricky topologies (Part→Master, Part-of-Part, downstream-seed ref).
How it surfaces today
- Simple downstream semijoin seed (
A & (X & cond)) trips an unrelated plan-time crash first —
extract_column_names(condition.py:474) harvests the subquery's backtick identifiers (schema,
table) as if columns →Attribute \` is not found`. So the semijoin case fails-closed by
accident (cryptically) rather than stranding. - More complex conditions that pass planning: MySQL may abort via 1093 (self-ref sub-case); PostgreSQL
may silently strand. Backend-dependent patchwork.
References
- Surfaced in the 2.3.1
dj.Diagramreview (finding F8). - Code:
table.py:1089(reverse-topo delete loop),diagram.py:365(seed restriction storage),
diagram.py:1084(__reversed__→_restricted_table),_propagate_part_to_master(Part→Master
materialization),condition.py:438-456/:474(restriction rendering /extract_column_names).
- Dominant language
- Python
- Stars
- 197
- Forks
- 98
- Avg merge
- 6d 7h
- Merged PRs (30d)
- 1
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from datajoint/datajoint-python
-
Difficulty 2/5 1-3 hours Newbie friendliness 76/100
datajoint/datajoint-python#1539 · 3 comments ·
-
dj.Diagram SVG output is not byte-reproducible: set iteration order leaks into node emission order Openbug
Difficulty 3/5 1-2 days Newbie friendliness 78/100
datajoint/datajoint-python#1551 ·
-
Difficulty 5/5 Over a week Newbie friendliness 35/100
datajoint/datajoint-python#1550 ·
-
Difficulty 5/5 Over a week Newbie friendliness 35/100
datajoint/datajoint-python#1547 ·
-
Difficulty 4/5 3-5 days Newbie friendliness 52/100
datajoint/datajoint-python#1546 · 1 comment ·
All issues in datajoint/datajoint-python
Similar issues
-
bug
Difficulty 2/5 1-3 hours Newbie friendliness 90/100
learningequality/ricecooker#747 ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
BSData/horus-heresy-3rd-edition#3171 ·
-
enhancement
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
-
Difficulty 2/5 1-3 hours Newbie friendliness 76/100
run-llama/llama_index#23199 ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 84/100
KhronosGroup/glTF-Blender-IO#2769 ·