[Feature] Paragraph about monitoring HPC

Open Beginner friendly
#492 0 comments 0 reactions 0 assignees View on GitHub

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Assessment

Difficulty
2/5
Estimated time
1-3 hours
Newbie friendliness
68/100
Issue type
Documentation
Clarity
Mostly clear
Activity status
Quiet
Domain
documentation, hpc

Research direction

Start with the HowTo guide and the linked issue #457 to find the relevant HPC workflow and existing context. Update the guide with high-level monitoring instructions and links covering intermediate output files at each stage and the Slurm jobs expected to spawn; the work is done when both topics are documented clearly.

Written by the indexing model from the issue text.

Description

enhancement

Is your feature request related to a problem? Please describe.
Follow up to https://github.com/brainglobe/brainglobe.github.io/issues/457

Describe the solution you'd like
The HowTo guide should include high-level instructions and links around how to monitor the HPC job, including

  • where to look for intermediate output files at different stages
  • what slurm jobs we expect to spawn
Dominant language
Python
Stars
14
Forks
32
Avg merge
12h 8m
Merged PRs (30d)
4

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First steps

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  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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