Pipeline config lookup points to the wrong folder for known pipelines
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Assessment
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Newbie friendliness
- 68/100
Research direction
Open sk/search-strategy/bio-research/skills/nextflow-development/scripts/utils/validators.py and start with load_pipeline_config("rnaseq"). Compare the computed location with skills/nextflow-development/scripts/config/pipelines and reproduce the lookup. Done means the existing rnaseq configuration resolves from the actual scripts/config/pipelines path instead of being reported missing.
Written by the indexing model from the issue text.
Description
Affected file: sk/search-strategy/bio-research/skills/nextflow-development/scripts/utils/validators.py
What I hit
I tried to validate a known pipeline name and got a false negative result, as if the pipeline did not exist.
I’m thinking this happens because script_dir = Path(__file__).parent.parent.parent moves too far up, so config/pipelines is searched in the wrong location.
Repro
- Call
load_pipeline_config("rnaseq"). - Compare against an existing file under
skills/nextflow-development/scripts/config/pipelines. - See lookup miss because the computed path is incorrect.
Expected
Lookup should resolve to the actual scripts/config/pipelines path.
Actual
Valid pipeline configs are treated as missing.
Suggested fix
Adjust config path calculation to the actual script directory structure.
- Dominant language
- Python
- Stars
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- Forks
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- Avg merge
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- Merged PRs (30d)
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