Problem with installing Kilosort2 using Docker on Windows (Visual Studio Code)

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Assessment

Difficulty
3/5
Estimated time
1-2 days
Newbie friendliness
25/100
Issue type
Bug
Clarity
Needs clarification
Activity status
Stale
Tech stack
docker, python, vscode
Domain
devops

Research direction

Start by reproducing the ss.run_sorter call with sorter_name="kilosort2" and docker_image=True in Visual Studio Code on Windows, using the PowerShell environment mentioned in the report. Inspect the displayed error and Docker setup; done means the Kilosort2 image runs successfully through this entry point.

Written by the indexing model from the issue text.

Description

Im currently trying to pull an image from the spikeinterface Docker Hub using the following code (on Visual Studio Code):

sorting_KS2 = ss.run_sorter(sorter_name="kilosort2", recording=recording_preprocessed, docker_image=True, verbose=False)

However, I get the following error:

image

I verified that this file dows exist using powershell.
I am new to spikeinterface and is the first time using docker so would appreciate any help on how to solve this issue. Thanks.

Dominant language
Dockerfile
Stars
9
Forks
8
No merged PRs in 30d

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