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DrCoffey repositories

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DrCoffey/3DMorphMATLAB

3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.

Last commit Jan 21, 2020

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DrCoffey/DeepSqueakMATLAB

DeepSqueak: A Deep Learning Based System for Quantification of Ultrasonic Vocalizations

Last commit Oct 31, 2019

 (223 stars) (46 forks) (0 indexed issues) (0 open good first issues)
DrCoffey/Ethanol-Microglia-2026HTML

Data and Analysis Scripts For (2026) - Chronic Intermittent Ethanol Activates CHOP in Striatal Microglia and Exacerbates Ethanol Withdrawal

Last commit Feb 12, 2026

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DrCoffey/Five-Cycle-WGCNA-ManuscriptHTML

Analysis scripts for Bergkamp 5 cycle manuscript

Last commit Nov 6, 2025

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DrCoffey/G-Code-GeneratorMATLAB

Creates G-code for stereotaxic robots

Last commit Oct 29, 2019

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DrCoffey/ManuscriptsHTML

A repository that contains code used to generate figures and statistics for my peer-reviewed manuscripts

Last commit Sep 11, 2025

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DrCoffey/NAPE-Computing-Tutorial-CodesMATLAB

Last commit Oct 24, 2019

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DrCoffey/NAPE-Stats-CourseMATLAB

Code for NAPE Stats Course Exercises

Last commit Apr 9, 2020

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DrCoffey/Neurocience-ToolkitMATLAB

Last commit Feb 17, 2021

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DrCoffey/Oral-Fentanyl-ManuscriptMATLAB

Code and Data for the Oral Fentanyl Manuscript

Last commit Apr 1, 2023

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DrCoffey/Stereotaxic-Surgery-Robot

An open-souce stereotaxic surgery robot

Last commit May 22, 2019

 (1 star) (2 forks) (0 indexed issues) (0 open good first issues)
DrCoffey/Surgery-G-CodesMATLAB

G-codes for the stereotaxic robot

Last commit Oct 29, 2019

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DrCoffey/ViiA-7-MatlabMATLAB

Get qPRC date into something readable

Last commit Apr 22, 2019

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DrCoffey/VocalMatMATLAB

Analysis of ultrasonic vocalizations from mice using computer vision and machine learning

Last commit May 26, 2020

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DrCoffey/WGCNAMATLAB

Last commit Apr 4, 2025

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DrCoffey/fishFinderMATLAB

Last commit Jul 15, 2025

 (4 stars) (0 forks) (0 indexed issues) (0 open good first issues)
DrCoffey/simbaPython

SimBA (Simple Behavioral Analysis), a plug-and-play pipeline and GUI for developing behavioral classifiers

Last commit Dec 21, 2019

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