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Assessment

Difficulty
5/5
Estimated time
Over a week
Newbie friendliness
10/100
Issue type
Refactor
Clarity
Needs clarification
Activity status
Stale
Tech stack
docker, github-actions, python
Domain
build-system, devops, tooling

Research direction

Start with the Renovate Dependency Dashboard and inspect the existing security pull requests before changing anything. Review requirements_dev.txt, requirements_doc.txt, requirements.txt, pyproject.toml, setup.cfg, Dockerfile, Helm/values.yaml, and .github/workflows/codeql.yml to understand the listed updates. Done means the selected dependency updates are applied and the repository checks pass.

Written by the indexing model from the issue text.

Description

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
View this repository on the Mend.io Web Portal.

Config Migration Needed

  • Select this checkbox to let Renovate create an automated Config Migration PR.

Pending Approval

The following branches are pending approval. To create them, click on a checkbox below.

  • Update all dependencies (dials_data, gemmi, graphviz, htcondor, importlib_metadata, ispyb, matplotlib, mrcfile, opencv-python, opencv-python-headless, pandas, plotly, pytest-mock, sphinx-rtd-theme, starfile, workflows, zocalo)
  • Update actions/checkout action to v6
  • Update all dependencies (major) (Sphinx, htcondor, importlib_metadata, ispyb, numpy, pandas, plotly, pytest-cov, sphinx-rtd-theme, workflows, zocalo)
  • Update github/codeql-action action to v4
  • πŸ” Create all pending approval PRs at once πŸ”

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

Detected Dependencies

dockerfile (1)
Dockerfile (1)
  • nvidia/cuda 10.2-devel-centos7
github-actions (1)
.github/workflows/codeql.yml (4)
  • actions/checkout v3 β†’ [Updates: v6]
  • github/codeql-action v2 β†’ [Updates: v4]
  • github/codeql-action v2 β†’ [Updates: v4]
  • github/codeql-action v2 β†’ [Updates: v4]
helm-values (1)
Helm/values.yaml
pep621 (1)
pyproject.toml (1)
  • setuptools >= 40.6.0
pip_requirements (3)
requirements_dev.txt (18)
  • bump2version ==1.0.1
  • dials_data ==2.4.81 β†’ [Updates: ==2.4.141]
  • gemmi ==0.6.5 β†’ [Updates: ==0.7.5]
  • graphviz ==0.20.2 β†’ [Updates: ==0.21]
  • ispyb ==10.0.0 β†’ [Updates: ==10.2.4, ==12.0.0]
  • matplotlib ==3.8.3 β†’ [Updates: ==3.10.9]
  • mrcfile ==1.5.0 β†’ [Updates: ==1.5.4]
  • opencv-python ==4.9.0.80 β†’ [Updates: ==4.13.0.92]
  • pandas ==2.2.1 β†’ [Updates: ==2.3.3, ==3.0.2]
  • pillow ==10.2.0 β†’ [Updates: ==10.3.0]
  • plotly ==5.20.0 β†’ [Updates: ==5.24.1, ==6.7.0]
  • pydantic ==1.10.7 β†’ [Updates: ==1.10.13]
  • pytest-cov ==4.1.0 β†’ [Updates: ==7.1.0]
  • pytest-mock ==3.12.0 β†’ [Updates: ==3.15.1]
  • pytest ==8.1.1 β†’ [Updates: ==9.0.3]
  • starfile ==0.5.6 β†’ [Updates: ==0.5.13]
  • workflows ==2.26 β†’ [Updates: ==2.28, ==3.4]
  • zocalo ==0.30.2 β†’ [Updates: ==0.32.0, ==1.4.0]
requirements_doc.txt (10)
  • gemmi ==0.6.5 β†’ [Updates: ==0.7.5]
  • ispyb ==10.0.0 β†’ [Updates: ==10.2.4, ==12.0.0]
  • matplotlib ==3.8.3 β†’ [Updates: ==3.10.9]
  • mrcfile ==1.5.0 β†’ [Updates: ==1.5.4]
  • pandas ==2.2.1 β†’ [Updates: ==2.3.3, ==3.0.2]
  • pillow ==10.2.0 β†’ [Updates: ==10.3.0]
  • plotly ==5.20.0 β†’ [Updates: ==5.24.1, ==6.7.0]
  • pydantic ==1.10.7 β†’ [Updates: ==1.10.13]
  • Sphinx ==4.5.0 β†’ [Updates: ==9.1.0]
  • sphinx-rtd-theme ==1.0.0 β†’ [Updates: ==1.3.0, ==3.1.0]
requirements.txt (14)
  • gemmi ==0.6.5 β†’ [Updates: ==0.7.5]
  • htcondor ==23.5.2 β†’ [Updates: ==23.10.29, ==25.8.2]
  • importlib_metadata ==7.0.2 β†’ [Updates: ==7.2.1, ==9.0.0]
  • matplotlib ==3.8.3 β†’ [Updates: ==3.10.9]
  • mrcfile ==1.5.0 β†’ [Updates: ==1.5.4]
  • numpy ==1.26.4 β†’ [Updates: ==2.4.4]
  • opencv-python-headless ==4.9.0.80 β†’ [Updates: ==4.13.0.92]
  • pandas ==2.2.1 β†’ [Updates: ==2.3.3, ==3.0.2]
  • pillow ==10.2.0 β†’ [Updates: ==10.3.0]
  • plotly ==5.20.0 β†’ [Updates: ==5.24.1, ==6.7.0]
  • pydantic ==1.10.7 β†’ [Updates: ==1.10.13]
  • starfile ==0.5.6 β†’ [Updates: ==0.5.13]
  • workflows ==2.26 β†’ [Updates: ==2.28, ==3.4]
  • zocalo ==0.30.2 β†’ [Updates: ==0.32.0, ==1.4.0]
setup-cfg (1)
setup.cfg (1)
  • pydantic ==1.10.7 β†’ [Updates: ==1.10.13]
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Dominant language
Python
Stars
8
Forks
3
No merged PRs in 30d

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