BfArM-MVH/grz-tools

Check for genome version mismatch: Overlap .bed file with chromosome ranges

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#464 opened on Nov 24, 2025

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good first issuepriority: low

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Description

Check if the chromosome intervals in the .bed file are within the genome range

Contributor guide

Research direction
Inspect the BED file format and implement a check to ensure chromosome intervals are within the genome ranges.
Tech stack
python
Domain
bioinformatics
Issue type
Feature
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Clear
Prerequisites
Python
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
70